| Accabonac Harbor |
| Adirondack Forest Tract |
| Adirondack Loon Complex |
| Albany Pine Bush |
| Allegany Forest Tract |
| Ashokan Reservoir Area |
| Aurora Grasslands Complex |
| Bashakill Wildlife Management Area |
| Bergen Swamp |
| Black Creek Marsh |
| Braddock Bay |
| Brasher Falls and Bombay Forests |
| Butler Sanctuary |
| Canandaigua Lake |
| Captree Island Vicinity |
| Carman's River Estuary |
| Caswell Road Grassland Complex |
| Catskills Peaks Area |
| Cayuga Lake |
| Central Park |
| Chautauqua Lake |
| Chazy Landing/Kings Bay Area |
| Clay Pit Ponds State Park Preserve |
| Connecticut Hill Area |
| Connetquot Estuary |
| Constitution Marsh Sanctuary |
| Cowaselon Creek Watershed Area |
| Crane Neck to Misery Point |
| Crown Point State Historic Site |
| Derby Hill Bird Observatory |
| Doodletown and Iona Island |
| Dunkirk Harbor & Point Gratiot |
| Eastern Lake Ontario Barrier Beaches |
| Edith G. Read Wildlife Sanctuary |
| Fahnestock and Hudson Highlands State Parks |
| Finger Lakes National Forest |
| Fire Island (East of Lighthouse) |
| Fort Drum |
| Fort Edward Grasslands |
| Four Brother Islands |
| Galen Marsh |
| Gardiner's Island |
| Great Gull Island |
| Great South Bay |
| Great Swamp |
| Greater Summerhill Area |
| Hamlin Beach State Park |
| Happy Valley Wildlife Management Area |
| Harbor Herons Complex |
| Harriman and Sterling Forests |
| Hemlock and Canadice Lakes |
| Hempstead Lake State Park |
| High Tor Wildlife Management Area |
| Hoffman and Swinburne Island Complex |
| Hook Mountain |
| Huckleberry Island |
| Huntington and Northport Bays |
| Indian River/Black Lakes |
| Iroquois NWR/Oak Orchard and Tonawanda WMAs |
| Jamaica Bay |
| John Boyd Thacher State Park |
| Keeney Swamp Forest |
| Lake George Peregrine Site |
| Letchworth State Park |
| Lisbon Grasslands |
| Little Galloo Island |
| Little Neck Bay to Hempstead Harbor |
| Little Whaley Lake |
| Long Island Pine Barrens |
| Long Pond State Forest |
| Lower Hudson River |
| Lower St. Lawrence River |
| Marshlands Conservancy |
| Massawepee Mire |
| Mecox Sagaponack Coastal Dunes |
| Mongaup Valley Wildlife Management Area |
| Montauk Point |
| Montezuma Wetlands Complex |
| Moose River Plains/Blue Ridge Area |
| Moreau Lake Forest |
| Moriches Bay |
| Muttontown Preserve |
| Napeague Harbor and Beach |
| Nation's Road Grasslands |
| Niagara River Corridor |
| Nissequague River Watershed and Smithtown Bay |
| North Brother/South Brother Islands |
| Northern Adirondack Peaks |
| Northern Shawangunk Mountains |
| Northwest Harbor/Shelter Island Complex |
| Oneida Lake Islands |
| Onondaga Lake |
| Orient Point and Plum Island |
| Oyster Bay Area |
| Peconic Bays and Flanders Bay |
| Pelham Bay Park |
| Pepacton Reservoir |
| Perch River Complex |
| Pharsalia Woods |
| Plattsburgh Airfield |
| Point Penisula |
| Prospect Park |
| Queen Catharine Marsh |
| Rensselaer Forest Tract |
| Ripley Hawk Watch |
| Rochester Area Urban Parks |
| Rockefeller State Park |
| Salmon Creek |
| Saratoga National Historic Park |
| Schodack Island State Park |
| Seneca Army Depot |
| Seneca Lake |
| Shawangunk Grasslands |
| Shinnecock Bay |
| Southampton Green Belt |
| Southern Skaneateles Lake Forest |
| Spring Pond Bog |
| Stillwater Reservoir |
| Stissing Ridge |
| Stockport Flats |
| The Center at Horseheads Fields |
| Tifft Nature Preserve |
| Tioughnioga River/Whitney Point Reservoir |
| Tivoli Bays |
| Toad Harbor Swamp |
| Tug Hill Area |
| Upper Delaware River |
| Upper St. Lawrence/Thousand Islands |
| Valcour Island |
| Van Cortlandt Park |
| Vischer Ferry Nature and Historic Preserve |
| Ward Pound Ridge |
| West Hempstead Bay/Jones Beach West |
| Wheeler's Gulf |
| Whisky Hollow |
| Widger Hill |
| William C. Whitney Wilderness Area |
| , , |
| Cold, High Gradient: >= 0.1%, Headwater/Creek/Small River |
| Cold, High Gradient: >=2%, Headwater/Creek/Small River |
| Cold, Moderate Gradient: >=0.5 < 2%, Headwater/Creek/Small River |
| Transitional Cool, High Gradient: >= 0.1%, Headwater/Creek/Small River |
| Transitional Cool, High Gradient: >= 0.1%, Medium River |
| Transitional Cool, High Gradient: >=2%, Headwater/Creek/Small River |
| Transitional Cool, Low Gradient: < 0.5%, Headwater/Creek/Small River |
| Transitional Cool, Low Gradient: <0.02%, Headwater/Creek/Small River |
| Transitional Cool, Low Gradient: <0.02%, Medium River |
| Transitional Cool, Moderate Gradient: >= 0.02 < 0.1%, Headwater/Creek/Small River |
| Transitional Cool, Moderate Gradient: >= 0.02 < 0.1%, Medium River |
| Transitional Cool, Moderate Gradient: >=0.5 < 2%, Headwater/Creek/Small River |
| Warm, Low Gradient: < 0.5%, Headwater/Creek/Small River |
| Warm, Low Gradient: <0.02%, Large/Great River |
| Warm, Low Gradient: <0.02%, Medium River |
| Warm, Moderate Gradient: >= 0.02 < 0.1%, Medium River |